API Reference#

This section contains the API reference for AMICI.

Main Classes#

AMICI(adata, **model_kwargs)

AMICIModule(n_genes, n_labels, ...[, ...])

Interpretation Modules#

AMICIAttentionModule([_adata, _labels_key, ...])

AMICICounterfactualAttentionModule([_adata, ...])

AMICIExplainedVarianceModule([_adata, ...])

AMICIAblationModule([_adata, ...])

Callbacks#

AttentionPenaltyMonitor([epoch_start, ...])

ModelInterpretationLogging([n_epochs_plot, ...])

Utilities#

is_count_data(data[, n_to_check])

Source: SCVI data utils (scverse/scvi-tools)