API Reference

This section contains the API reference for AMICI.

Main Classes

AMICI(adata, **model_kwargs)
AMICIModule(n_genes, n_labels, ...[, ...])

Interpretation Modules

AMICIAttentionModule([_adata, _labels_key, ...])
AMICICounterfactualAttentionModule([_adata, ...])
AMICIExplainedVarianceModule([_adata, ...])
AMICIAblationModule([_adata, ...])

Callbacks

AttentionPenaltyMonitor([epoch_start, ...])
ModelInterpretationLogging([n_epochs_plot, ...])

Utilities

is_count_data(data[, n_to_check])

Source: SCVI data utils (scverse/scvi-tools)